ASAP II - Alternative Splicing Annotation Project | Tool name | ASAP II - Alternative Splicing Annotation Project |
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| URL | http://bioinfo.mbi.ucla.edu/ASAP2/ |
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| Important features | |
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| Citations | Kim N, Alekseyenko AV, Roy M, Lee C. The ASAP II database: analysis and
comparative genomics of alternative splicing in 15 animal species. Nucleic AcIDs
Res. 2007 Jan;35(Database issue):D93-8. Epub 2006 Nov 15. PubMed PMID: 17108355;
PubMed Central PMCID: PMC1669709.
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| Year of publication | 2006 |
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| Rank by usage frequency | 100 |
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| Comments | 1) Gives Genomic expression. 2) Gives Genomic location, gene aliases etc. as gene information. 3) Orthologous genes identified by MULTIZ alignments are given. 4) Isoform sequences are given. 5) Type of exons- Alternative or Constitute are given along with genomic position and number of EST and mRNA observed. 6) Intron type- Alternative or Constitutive, 5 site, 3 site, whether canonical or not and splice type, all information is provided. 7) Alternative Splicing information is provided. |
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| Function | Exon detail, Exon detail: length, Intron detail, Intron detail: length, Graphical display of transcripts, Alignment, Expression information, Gene Information, Species, Finds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in zebrafish, Finds alternative splicing in dog, Finds alternative splicing in cow, Finds alternative splicing in other species |
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| Category | |
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| Input file format | Gene symbol, Unigene sequence identifier, Unigene Cluster identifier, Gene title, Genbank Sequence Identifier. |
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| Output file format | Tabular and graphical format |
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| Limitation | |
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